NaeI

NaeI cuts DNA at GCCGGC, leaving blunt ends. Its 6 bp site occurs about once every 4,096 bp of random sequence.

Recognition & cut site

GCC^GGC

Properties

Recognition site
GCCGGC
Cut site
GCC^GGC
Ends produced
blunt
Overhang
—
Site length
6 bp
Cuts on average
1 / 4,096 bp
Palindromic
Yes
Cuts within site
Yes (type II)

Sequence checker

Runs in your browser. Nothing is uploaded.

Related enzymes

Isoschizomers

same site, same cut
  • CcoI
  • PdiI
  • SauBMKI
  • SauHPI
  • SauLPI
  • SauNI
  • SauSI
  • Slu1777I
  • SspCI

Neoschizomers

same site, different cut position
  • Eco56I
  • MroNI
  • NgoAIV
  • NgoMIV
  • SceIII
  • SrlI

Compatible ends

different site, matching overhang

None known.