HpaI
HpaI cuts DNA at GTTAAC, leaving blunt ends. Its 6 bp site occurs about once every 4,096 bp of random sequence.
Recognition & cut site
GTT^AAC
Properties
- Recognition site
- GTTAAC
- Cut site
- GTT^AAC
- Ends produced
- blunt
- Overhang
- —
- Site length
- 6 bp
- Cuts on average
- 1 / 4,096 bp
- Palindromic
- Yes
- Cuts within site
- Yes (type II)
Sequence checker
Runs in your browser. Nothing is uploaded.
Related enzymes
Isoschizomers
same site, same cut- BstEZ359I
- BstHPI
- KspAI
- SsrI
Neoschizomers
same site, different cut positionNone known.
Compatible ends
different site, matching overhangNone known.