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Star Republic: Guide for Biologists

Multiple sequence alignments

ClustalW is a maultipe sequence alignment program for DNA or proteins. The online version at EMBL-EBI accepts a variety of input format. For details read the help page for ClustalW.

A HMM-based multiple alignment tool can be found at http://www.soe.ucsc.edu/research/compbio/HMM-apps/tubeup-alignment.html.

For pretty printing of the multiple alignments, see Shading of multiple sequence alignments.